PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10109195 to PF05553 (DUF761)

VIMSS10109195 has 187 amino acids

Query:       DUF761  [M=36]
Accession:   PF05553.15
Description: Cotton fibre expressed protein
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-21   62.1   2.4    2.3e-21   61.4   2.4    1.3  1  VIMSS10109195  


Domain annotation for each sequence (and alignments):
>> VIMSS10109195  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.4   2.4   2.3e-21   2.3e-21       1      36 []     150     185 ..     150     185 .. 0.98

  Alignments for each domain:
  == domain 1  score: 61.4 bits;  conditional E-value: 2.3e-21
         DUF761   1 deevDakAEaFIakFreqlrLQRqeSikryqemlaR 36 
                    ++e+D+ A+ FI +F++q++LQ++ S+kryqemlaR
  VIMSS10109195 150 EDEIDHVADLFISRFHKQMKLQKLLSFKRYQEMLAR 185
                    59*********************************8 PP



Or compare VIMSS10109195 to CDD or PaperBLAST