VIMSS10158619 has 321 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.8e-29 86.6 0.2 5.4e-28 84.1 0.1 2.1 2 VIMSS10158619
Domain annotation for each sequence (and alignments):
>> VIMSS10158619
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.1 0.0 0.28 0.28 95 106 .. 71 82 .. 21 100 .. 0.63
2 ! 84.1 0.1 5.4e-28 5.4e-28 3 195 .. 152 314 .. 150 316 .. 0.81
Alignments for each domain:
== domain 1 score: -3.1 bits; conditional E-value: 0.28
UPF0020 95 Naekagvgdlie 106
a + +++++
VIMSS10158619 71 AAANVDREGTVA 82
223333334444 PP
== domain 2 score: 84.1 bits; conditional E-value: 5.4e-28
UPF0020 3 yRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaek 98
R+f++p+++ + A+a+v++ag+++g ++lDPmCG+G++l+Ea+l+ga+++ g+D ++++v gareN+++
VIMSS10158619 152 DRPFFQPGSMAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVV--------------------------GVDAQAKMVGGARENLRH 221
69**************************************************..........................****************** PP
UPF0020 99 agvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkal.ekLYseflrelkrvlrgggrlvlltaenkalekaleer..alrkvkeknvkl 191
+ ++ + da++L+l+++++d v + PYG+ + ++ +L l e+ rv + ++++a +++ ++a+e++ +++v e++v+
VIMSS10158619 222 YVGSGDVV--RGDATALPLRDDSMDGAVFDAPYGRQSKIARHSlADLVGGALAEVRRVAPE----CVMVA-DRSWAEAAEDAgwGVERVFERRVHR 310
*8877665..556777776688************976655543355555555555555544....55555.5666677777758889999999999 PP
UPF0020 192 glll 195
+l++
VIMSS10158619 311 SLVR 314
8876 PP
Or compare VIMSS10158619 to CDD or PaperBLAST