PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10255367 to PF04285 (DUF444)

VIMSS10255367 has 423 amino acids

Query:       DUF444  [M=419]
Accession:   PF04285.16
Description: Protein of unknown function (DUF444)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   2.6e-187  609.0   0.1   2.9e-187  608.8   0.1    1.0  1  VIMSS10255367  


Domain annotation for each sequence (and alignments):
>> VIMSS10255367  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  608.8   0.1  2.9e-187  2.9e-187       2     419 .]       4     419 ..       3     419 .. 0.98

  Alignments for each domain:
  == domain 1  score: 608.8 bits;  conditional E-value: 2.9e-187
         DUF444   2 iidrrlngknkslenrqRflrrvkeqikkavadavsersitdiskgekikipikdikepefrygkggkregVlpGnkefkeGdkierpeggggggg 97 
                    +idrrlngknks++nrqRflrr+k+qik++vada+++rs++d+++ge+++ip++di+ep f++g+gg+r++V+pGn++f+  d+ier++ggg ggg
  VIMSS10255367   4 FIDRRLNGKNKSAVNRQRFLRRYKSQIKQSVADAIHRRSVSDVESGESVTIPRDDISEPLFQQGSGGERHRVHPGNDHFVPHDHIERQQGGGAGGG 99 
                    9*****************************************************************************************999999 PP

         DUF444  98 sgegseaGe.geDefefelsreEfldllfedLeLPdLekkklekveekktkragytkkGspsnldvkrtlrealkRrialkrpkerelreleeele 192
                    sg+   +Ge g+D+f+f++s++E+ldllfedL+LP+L++ + ++++e+kt+ragyt +G+p+n++v+r+lr++l+Rr+a++++k+r l++le++l+
  VIMSS10255367 100 SGDA-GNGEgGQDDFVFQISKDEYLDLLFEDLALPNLRHSHYQQLTEFKTHRAGYTASGVPANISVVRSLRNSLARRTAMSAAKRRALHQLEQQLD 194
                    8865.556659************************************************************************************* PP

         DUF444 193 eleaeeeeeeeeeleeleeeieeleerikripfidelDlrYrrvekepkpesnaVmfclmDvSGSMdeakkdlakrfFilLylFlkrkYekvevvF 288
                    +l+++e  ++  e+ +l++eie+l++ri+r+pfid++DlrY+++e++p+p+s+aVmfclmDvSGSMd+a+k++akrf++lLylFl+r+Y+++evv+
  VIMSS10255367 195 ALQHSEP-AQPLETLRLRNEIETLRQRIARVPFIDSIDLRYKNYERRPEPSSQAVMFCLMDVSGSMDQATKEMAKRFYLLLYLFLSRNYKNIEVVY 289
                    **99988.5556999********************************************************************************* PP

         DUF444 289 irHtteAkeVdeeeFFysresGGTvvSsalelaeeiieerYppseWNiYaaqaSDGdnwseDsekavellaekllpvvqyfaYieitpseeeqtlw 384
                    irH+t+AkeVde+eFFys+e+GGT+vSsal+l++ei+++rY+p++WNiYaaqaSDGdnw++Ds+ +++ll+++llp+v+y+ Yieit+ +++qtlw
  VIMSS10255367 290 IRHHTQAKEVDEQEFFYSQETGGTIVSSALKLMDEIVRARYDPAQWNIYAAQASDGDNWADDSPLCQQLLTTRLLPLVRYYCYIEITR-RAHQTLW 384
                    ****************************************************************************************.******* PP

         DUF444 385 eeyekvaeeeenfamrkikekediypvfrelfkke 419
                    +eye ++++ +nfam++i+e++diypvfrelf ++
  VIMSS10255367 385 REYEGLSQRCDNFAMQHIREPQDIYPVFRELFARQ 419
                    ********************************986 PP



Or compare VIMSS10255367 to CDD or PaperBLAST