PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10256753 to PF01817 (CM_2)

VIMSS10256753 has 373 amino acids

Query:       CM_2  [M=79]
Accession:   PF01817.25
Description: Chorismate mutase type II
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    3.6e-26   77.7   0.1    7.1e-26   76.8   0.1    1.5  1  VIMSS10256753  


Domain annotation for each sequence (and alignments):
>> VIMSS10256753  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.8   0.1   7.1e-26   7.1e-26       1      76 [.       9      84 ..       9      87 .. 0.97

  Alignments for each domain:
  == domain 1  score: 76.8 bits;  conditional E-value: 7.1e-26
           CM_2  1 RkeIdeiDrelleLlaeRmelakeiaeyKkenglpvldpeReeevlerlregaeelgldpeavekifreiisesra 76
                   R++Ide+D+ ll Lla+R++l+ +++e+K++ glpv+ peRe+ +l+ +r++a++lg++p+++e+++r++++es  
  VIMSS10256753  9 RDSIDEVDKALLGLLARRLQLVAQVGEVKSRYGLPVYVPEREAVMLASRRAEAQQLGVSPDLIEDVLRRVMRESYV 84
                   99***********************************************************************975 PP



Or compare VIMSS10256753 to CDD or PaperBLAST