PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10443598 to PF01817 (CM_2)

VIMSS10443598 has 218 amino acids

Query:       CM_2  [M=79]
Accession:   PF01817.25
Description: Chorismate mutase type II
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    5.9e-18   51.4   0.0    1.2e-17   50.4   0.0    1.5  1  VIMSS10443598  


Domain annotation for each sequence (and alignments):
>> VIMSS10443598  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.4   0.0   1.2e-17   1.2e-17      10      78 ..      57     125 ..      56     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 50.4 bits;  conditional E-value: 1.2e-17
           CM_2  10 elleLlaeRmelakeiaeyKkenglpvldpeReeevlerlregaeelgldpeavekifreiisesralQ 78 
                     l +L+aeR+ +a+++a++K  +  p+ dp Re+++l+ +++ a  lgldp+av+++fr+ i++ + +Q
  VIMSS10443598  57 ALTDLFAERLLVADKVAAAKYGTATPIDDPVREKAILDDVAARAVGLGLDPDAVTAVFRDQIEANKLVQ 125
                    589*************************************************************99888 PP



Or compare VIMSS10443598 to CDD or PaperBLAST