VIMSS104844 has 170 amino acids
Query: DUF308 [M=73]
Accession: PF03729.18
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-25 73.5 65.2 2.4e-17 49.3 13.9 3.1 3 VIMSS104844
Domain annotation for each sequence (and alignments):
>> VIMSS104844
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.3 13.9 2.4e-17 2.4e-17 1 73 [] 14 86 .. 14 86 .. 0.98
2 ! 32.3 21.8 4.8e-12 4.8e-12 2 73 .] 73 140 .. 72 140 .. 0.91
3 ! 17.0 13.5 2.8e-07 2.8e-07 4 44 .. 129 169 .. 126 170 .] 0.94
Alignments for each domain:
== domain 1 score: 49.3 bits; conditional E-value: 2.4e-17
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllllf 73
++G+ll+ l+++++++P + a+++liG+++l+ G++q++ +a++ gg+ + l++Gi++i++Gl+++f
VIMSS104844 14 IMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIIYRRKAKALVGGNQNWILFMGIVDILFGLIVIF 86
79*********************************************************************97 PP
== domain 2 score: 32.3 bits; conditional E-value: 4.8e-12
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllllf 73
+Gi+ i++G++++++ ga+++++++++++++++s+i++l+ +f + +g+ ++ ++++ +l i++G++llf
VIMSS104844 73 MGIVDILFGLIVIFNVGASSAFFIYMFAFWFIFSSIAGLF-TF--TG-SGSLKLISVIFNLLGIVFGVILLF 140
8**************************************5.66..34.556677899*************98 PP
== domain 3 score: 17.0 bits; conditional E-value: 2.8e-07
DUF308 4 illiilGilaliwPgaallalviliGvlllvsGivqlvaaf 44
+l i++G+++l++P++ +++++++i++ +++ G++ +v a+
VIMSS104844 129 LLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDAL 169
589********************************999886 PP
Or compare VIMSS104844 to CDD or PaperBLAST