PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10541 to PF12263 (DUF3611)

VIMSS10541 has 191 amino acids

Query:       DUF3611  [M=175]
Accession:   PF12263.13
Description: Protein of unknown function (DUF3611)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-62  197.2   3.7    1.2e-62  197.1   3.7    1.0  1  VIMSS10541  


Domain annotation for each sequence (and alignments):
>> VIMSS10541  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  197.1   3.7   1.2e-62   1.2e-62       2     175 .]      14     190 ..      13     190 .. 0.96

  Alignments for each domain:
  == domain 1  score: 197.1 bits;  conditional E-value: 1.2e-62
     DUF3611   2 kalqriasalrllGwigFwlQlvlgvvsalillfallsrsl.esnaglgfglflavlglvlllfsiywafrytrlarrlqaenpelrPkkaevlqllrl 99 
                 +a  r++  l+++G+igFw+Q+vlg+ s++++lfa +s s  ++++g+++g++ a++++vll+f+i+++ ry+rl+r+l++++++++P++a++l+l+r+
  VIMSS10541  14 QAALRASVDLTTWGNIGFWVQIVLGAFSVVTFLFAGFSLSGpNRTTGIEAGILSAFISIVLLGFGIFFSTRYRRLGRNLKDSEATKHPRRADILKLIRI 112
                 56789999******************************99999999***************************************************** PP

     DUF3611 100 GlivnlvGmllallgaeatvglLlakalsqpqgvavi..dpsklvqplDvlvvqAntntilAhfvGlvvsLwLlerin 175
                 Gli+nlvGm++a++g  a+ g++l kals+p+g+     dp+++vq+ D+l++qAn+nti+Ahf+Gl++sLwLl+r+n
  VIMSS10541 113 GLIINLVGMGTAIIGGAAMSGIVLGKALSVPPGTFASaaDPNRFVQSTDLLAIQANINTIIAHFTGLLSSLWLLDRLN 190
                 ******************************99655445899**********************************985 PP



Or compare VIMSS10541 to CDD or PaperBLAST