VIMSS1099921 has 383 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.7e-57 178.7 0.0 7.7e-57 178.3 0.0 1.2 1 VIMSS1099921
Domain annotation for each sequence (and alignments):
>> VIMSS1099921
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 178.3 0.0 7.7e-57 7.7e-57 1 194 [. 162 365 .. 162 368 .. 0.95
Alignments for each domain:
== domain 1 score: 178.3 bits; conditional E-value: 7.7e-57
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear..aelklygsD 83
RgyR +g+apLke+ Aa+l+ l++w+++ p++DP GsGti+IEaal+g+niapg++r+f++e +ka a+++++ +el+++g D
VIMSS1099921 162 RGYRLEKGEAPLKENFAASLILLSRWQPDMPFVDPTTGSGTIAIEAALIGRNIAPGMHRKFAFEdfdwidatvladAKADAKAQEKpdQELEIFGYD 258
9***********************************************************************99886777777766657778***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleera 180
+d+++v+ a+ Na++agv + i+f+q+ +++++ ++ ++vi++npPYG+rl+++ + + LY+e++++ + l++ ++ ++++++ ++++ +++ra
VIMSS1099921 259 IDQNMVDIAKLNANEAGVLHDIQFKQLAVKDFK-TDLTNGVIIANPPYGKRLSDQTQARVLYKEMGDTYRS-LKT--WSKYILTSDLQFQESFGQRA 351
*********************************.88899****************************9988.999..******************** PP
UPF0020 181 lrkvkeknvklgll 194
++++k++n++++++
VIMSS1099921 352 TKRRKLYNGRIQTD 365
*********99876 PP
Or compare VIMSS1099921 to CDD or PaperBLAST