VIMSS11306 has 258 amino acids
Query: DUF92 [M=251]
Accession: PF01940.21
Description: Integral membrane protein DUF92
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-69 220.0 12.6 2.2e-69 219.7 12.6 1.1 1 VIMSS11306
Domain annotation for each sequence (and alignments):
>> VIMSS11306
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 219.7 12.6 2.2e-69 2.2e-69 4 251 .] 28 245 .. 25 245 .. 0.94
Alignments for each domain:
== domain 1 score: 219.7 bits; conditional E-value: 2.2e-69
DUF92 4 lllaalayrkksltlsGalaavlvgvlillaplglaffllllvFfllgsllTkvkkeeKakaklaeekegaRgavqVlanglvalllallyallelske 102
ll+ a+ kk+lt+ G+ +a+++gv+i++a lg++++l++l++f++gs++T+++++eK++a++ae+++g+Rg+++V++++l+a+l+al++a+
VIMSS11306 28 LLALAAIAPKKLLTPWGYGHAWVLGVIIWAA-LGWRGYLVVLAYFFVGSAVTRIGQKEKEAAGIAEKRSGQRGPENVWGSALTAALCALAIAFGPEP-- 123
4556667789*********************.**********************************************************8633323.. PP
DUF92 103 llalssllllgfvaslaaalaDTlaSElGkllskkprlittlkkvppGtnGgVsllGtlagllGalliallallllllakqlklillvtlaGllGsllD 201
++ +l+lg+vas++++l+DT+aSE+Gk+++k+++littl++vp+Gt+G+Vs++Gtlag++++l++a+l++ ++l ++ +i++ tla++++++l+
VIMSS11306 124 ---WQLWLALGYVASFSTKLSDTTASEVGKAYGKNTFLITTLQPVPRGTEGAVSVEGTLAGFAAGLALAVLGYGVGLI--SFGGIIFSTLAAFIATNLE 217
...45679***************************************************************9999975..5899*************** PP
DUF92 202 SllGAtlqasvvdketgkvvekkvkesrkisGldlldNnaVNllstllga 251
S++GAtlq++ + +l+N++VN ++t+lga
VIMSS11306 218 SVIGATLQNK----------------------WPWLTNEVVNGINTFLGA 245
**********......................**************9986 PP
Or compare VIMSS11306 to CDD or PaperBLAST