VIMSS113466 has 381 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.1e-62 194.9 0.0 8.7e-62 194.4 0.0 1.2 1 VIMSS113466
Domain annotation for each sequence (and alignments):
>> VIMSS113466
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.4 0.0 8.7e-62 8.7e-62 1 196 [. 161 367 .. 161 368 .. 0.96
Alignments for each domain:
== domain 1 score: 194.4 bits; conditional E-value: 8.7e-62
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear..aelklygsDl 84
RgyR ++g+ap+ketLAa+l+rla+wk ++pl+DP+CGsGti+IEa+l+++niapg++refv+e ++ea + a +e+++y+sD+
VIMSS113466 161 RGYRLAQGEAPIKETLAASLIRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEqwnimpaniyddYRDEADKMADydKEIEVYASDI 258
9***************************************************************************9999999999777888****** PP
UPF0020 85 drrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralr 182
d+++v+ a++Nae+ g++d+i+fs++d+ L+ +++e ++++npPYGer+g+ +++e++Y+ +++ +k++ + +++++nk++e +++++a++
VIMSS113466 259 DPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALIGNPPYGERIGDREEVEEMYRYIGKLMKQHPFL---STYILTSNKEFEYLVNRKATK 353
********************************7777777*******************************6555...89******************* PP
UPF0020 183 kvkeknvklglllk 196
++k++n++++++++
VIMSS113466 354 RRKLFNGYIECTYY 367
***********986 PP
Or compare VIMSS113466 to CDD or PaperBLAST