VIMSS120310 has 224 amino acids
Query: DUF1461 [M=176]
Accession: PF07314.16
Description: Protein of unknown function (DUF1461)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-46 143.7 15.5 3.3e-46 143.7 15.5 1.5 2 VIMSS120310
Domain annotation for each sequence (and alignments):
>> VIMSS120310
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 143.7 15.5 3.3e-46 3.3e-46 2 176 .] 11 196 .. 10 196 .. 0.91
2 ? -2.6 0.2 0.28 0.28 92 101 .. 202 211 .. 197 222 .. 0.37
Alignments for each domain:
== domain 1 score: 143.7 bits; conditional E-value: 3.3e-46
HHHHHHHHHHHHHHHHHHHS--HHHHHHHHHTTHHHHHT............--HHHHHHHHHHHHHHTSTT--S-.---SS----HHHHHHHHHHHHH CS
DUF1461 2 llalllilvilllsielvinfkplyyleieklklaekvg............lskeelkenykelidYlkgkgkek.lklpaffssekelaHfedVkkL 86
ll++l++++i+++++++++ fk lyy++i+ l+++++ + l+++++ke+y+++i+Y++g++k+k ++lp+++sse++++Hf dV k+
VIMSS120310 11 LLSILVFIFIFFIIVKFTVAFKYLYYYDIKALSITSNFNntiesysgkkivLNDKQVKEDYSYMISYINGNTKKKtFDLPNLPSSEHGKIHFMDVEKI 108
789*********************************998899999*************************988777********************** PP
HHHHHHHHHHHHHHH...HHHHHH....TT--HHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH-SSSTTS--TTT-GGGGGS-HHHH CS
DUF1461 87 fllallvrlvslill...lllliklkkkkkklkllkllaillllllllillllaaidFdkfFtlFHkifFnndlWlfdpatdpiInilPeeFF 176
++++++v++ + + + ++l++++ +k +lk+++ill++++++i++l + +F+++F+ FHk+fFnn++Wlfdpa dpiI +lPeeFF
VIMSS120310 109 IKKINMVAFSISLPMligIILCFIK----RKKLYLKITSILLFVTPVIIGVL-SLNGFSDIFIKFHKLFFNNNYWLFDPAYDPIILLLPEEFF 196
*****99998877773444444444....45599********9999888777.9**************************************9 PP
== domain 2 score: -2.6 bits; conditional E-value: 0.28
HHHHHHHHHH CS
DUF1461 92 lvrlvslill 101
l++l+++i+
VIMSS120310 202 LILLLCFICG 211
2222222222 PP
Or compare VIMSS120310 to CDD or PaperBLAST