PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1235281 to PF05974 (DUF892)

VIMSS1235281 has 168 amino acids

Query:       DUF892  [M=159]
Accession:   PF05974.16
Description: Domain of unknown function (DUF892)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-54  169.7   0.1    2.9e-54  169.6   0.1    1.0  1  VIMSS1235281  


Domain annotation for each sequence (and alignments):
>> VIMSS1235281  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.6   0.1   2.9e-54   2.9e-54       4     158 ..       5     156 ..       2     157 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.6 bits;  conditional E-value: 2.9e-54
        DUF892   4 elfideLrDayaaEkqalkalpkmakaaes.peLkaaleqHleeTeqqierleqvferlgeeasekkcdameglvaegqelleeaiedeevkdaali 99 
                   e+++d+LrDa+a+Ekqa+++l++ma+++++ peL+a++eqHl+eT++qi +le ++ r + + s +k d m++++a gq++++ + +de+vk+ +  
  VIMSS1235281   5 EHYHDWLRDAHAMEKQAESMLESMASRIDNyPELRARIEQHLSETKNQIVQLETILDRNDISRSVIK-DSMSKIAALGQSIGGIFPSDEIVKGSI-- 98 
                   89*****************************************************************.***************************.. PP

        DUF892 100 aaaqavehyEiasYgtLialAeqlgeaeaaelLeqtldeEkatdekLtelaeelvnqea 158
                    +++++e++Eia+Y++L+a+A+++g++    ++e++l+ Ek ++++L +++++++++++
  VIMSS1235281  99 -SGYVFEQFEIACYTSLLAAAKNAGDTASIPIIEAILNDEKHMADWLIQHIPQTTEKFL 156
                   .*****************************************************99875 PP



Or compare VIMSS1235281 to CDD or PaperBLAST