PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS123529 to PF09972 (DUF2207)

VIMSS123529 has 644 amino acids

Query:       DUF2207  [M=172]
Accession:   PF09972.14
Description: Predicted membrane protein (DUF2207) N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-43  133.5   0.1    6.1e-43  133.1   0.1    1.2  1  VIMSS123529  


Domain annotation for each sequence (and alignments):
>> VIMSS123529  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  133.1   0.1   6.1e-43   6.1e-43       2     170 ..      27     213 ..      26     215 .. 0.90

  Alignments for each domain:
  == domain 1  score: 133.1 bits;  conditional E-value: 6.1e-43
      DUF2207   2 IerydvdltvqedGslkVtEtitydf..dgsyrgiyrdrdlvtryeevdgsensyrvkv....lddgsepyskessgdv..........tlsagevtv 83 
                  I+ y++ +++++dG+l+VtEtit ++  ++++rgiy  rd++++  +  + ++++++++    +d+++e+y++es +++           l++ge+t+
  VIMSS123529  27 ISAYHSVIELAKDGTLTVTETITANVegNRIRRGIY--RDFPLTFADERNGRSKVDFNLlsveRDGDEEEYRTESISGGiriytgsadvLLPHGEHTF 122
                  899*********************************..888877788788888888888***999999****************************** PP

      DUF2207  84 tisYtlknavkvykdvaeLywkvigngwdvpienvtitvtlPsakngeeleawlhp..ldgktkvkkkdgsv..tfttrnlpageglevrv 170
                  +i+Y++++++++++d++eLyw+v+g++w++pie++t+tvtlP+ +++e l++++ +   ++k+++  ++g+     ttr l+++egl+v++
  VIMSS123529 123 QITYETSRQIRFFDDHDELYWNVTGTEWAFPIEEATATVTLPEGVKAEALDVFTGGygATEKDARAVEEGDEifFATTRRLRPQEGLTVAI 213
                  ******************************************************9999555554444444441477*************87 PP



Or compare VIMSS123529 to CDD or PaperBLAST