VIMSS1236688 has 373 amino acids
Query: PDH_N [M=154]
Accession: PF02153.21
Description: Prephenate dehydrogenase, nucleotide-binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.1e-17 49.2 0.0 1.1e-16 46.9 0.0 2.0 2 VIMSS1236688
Domain annotation for each sequence (and alignments):
>> VIMSS1236688
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.9 0.0 0.059 0.059 44 66 .. 57 79 .. 46 82 .. 0.77
2 ! 46.9 0.0 1.1e-16 1.1e-16 40 137 .. 137 225 .. 124 240 .. 0.84
Alignments for each domain:
== domain 1 score: -0.9 bits; conditional E-value: 0.059
PDH_N 44 keadivllavPvevilevlkela 66
+ a+ l vP++ i++vl+ +
VIMSS1236688 57 RRAEAEALGVPPDLIEDVLRRVM 79
566666799**********9875 PP
== domain 2 score: 46.9 bits; conditional E-value: 1.1e-16
PDH_N 40 ieavkeadivllavPvevilevlkelaphlkedalitDvgsvKekvvkelekllkgksfvgghPmaGteksGvdaareelfenavviLtPtek.tdk 135
+ v++a +v+++vP++v+++v+ +l p l +d++++D++svK+ + +++ + + g hPm+G+ ++ ++vv+ ++ k +
VIMSS1236688 137 ADIVSDAGMVIVSVPIHVTEQVIGKLPP-LPKDCILVDLASVKNGPLQAMLAAHD-GPVLGLHPMFGP--------DSGSLAKQVVVWCDGRKpEAY 223
46799***********************.*********************99998.89**********........777888888888888874444 PP
PDH_N 136 ea 137
++
VIMSS1236688 224 QW 225
44 PP
Or compare VIMSS1236688 to CDD or PaperBLAST