VIMSS125503 has 612 amino acids
Query: TIGR00110 [M=543]
Accession: TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-260 850.0 3.2 4.3e-260 849.8 3.2 1.0 1 VIMSS125503
Domain annotation for each sequence (and alignments):
>> VIMSS125503
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 849.8 3.2 4.3e-260 4.3e-260 2 542 .. 18 608 .. 17 609 .. 0.99
Alignments for each domain:
== domain 1 score: 849.8 bits; conditional E-value: 4.3e-260
TIGR00110 2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkahalDa 99
ar l++atG+kd d++kPiiavvns+t++vPghvhlkdl++lv++eieaaGgvakefntiav+DGiamgh+Gm+ysLpsreiiaDsve++v+ah++Da
VIMSS125503 18 ARGLWRATGMKDSDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSREIIADSVEYMVNAHCADA 115
689*********************************************************************************************** PP
TIGR00110 100 lvvissCDkivPGmlmaalrlniPaivvsGGpmeagktklsekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansmacltealGl 197
+v+is+CDki+PGmlmaalrlniPa++vsGGpmeagk+ l k + +d+++a++++a++k+s+e+++ iersacPt+gsCsG+ftansm+cltealGl
VIMSS125503 116 MVCISNCDKITPGMLMAALRLNIPAVFVSGGPMEAGKVVLHGKTHALDLVDAMVAAADDKVSDEDVQIIERSACPTCGSCSGMFTANSMNCLTEALGL 213
************************************************************************************************** PP
TIGR00110 198 slPgsstllatsaekkelakksgkrivelvkknik.......PrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrlsrkvPll 288
slPg++++lat+a++k+l+ ++g+ iv+l +++++ Pr+i+tk+afena++ld+a+GGstntvLh+la+a e ++++++dd+drlsrkvP+l
VIMSS125503 214 SLPGNGSTLATHADRKRLFVEAGHLIVDLARRYYEqedervlPRNIATKQAFENAMALDIAMGGSTNTVLHILAAAYEGEIDFTMDDIDRLSRKVPCL 311
************************************************************************************************** PP
TIGR00110 289 aklkPsgkkv.iedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlr...................................vdqdvi 350
+k++P+ v +ed+hraGG++++l+eldk gl+++d+ tv +tl++ +++ +++r ++ vi
VIMSS125503 312 SKVAPAKADVhMEDVHRAGGIMSILGELDKGGLINRDCPTVHAETLGDAIDRWDITRtssdtvrkffraapggiptqvafsqearwdeldtdRENGVI 409
******98888*********************************************9*******************************88555555** PP
TIGR00110 351 rsldnpvkkegglavLkGnlaeeGavvkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkk 448
rs+++p++k+gglavLkGn+a +G++vk+agv+e+ilkf Gpa+vfes+++a+++il+ ++k+GdvvviryeGPkGgPGm+emL+Pts+l++ GLgk+
VIMSS125503 410 RSVEHPFSKDGGLAVLKGNIALDGCIVKTAGVDESILKFSGPARVFESQDAAVKGILANEIKAGDVVVIRYEGPKGGPGMQEMLYPTSYLKSKGLGKA 507
************************************************************************************************** PP
TIGR00110 449 vaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDkikiDienrkldlevseeelaerrakakkkea.......revkgaLakyaklvssadkGa 539
+aLitDGrfsGgt+GlsiGhvsPeaa+gG+i+lv++GD+i iDi+nr++ l+v+e+ela+rr ++++k++ r+v aL++ya +++sad+Ga
VIMSS125503 508 CALITDGRFSGGTSGLSIGHVSPEAANGGTIGLVREGDMIDIDIPNRTISLRVDEAELAARRTEQDAKGWkpveqrkRRVTTALKAYAAFATSADRGA 605
*********************************************************************999**9998999***************** PP
TIGR00110 540 vld 542
v+d
VIMSS125503 606 VRD 608
*97 PP
Or compare VIMSS125503 to CDD or PaperBLAST