VIMSS12614 has 384 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-67 213.5 0.0 1.8e-67 213.0 0.0 1.2 1 VIMSS12614
Domain annotation for each sequence (and alignments):
>> VIMSS12614
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 213.0 0.0 1.8e-67 1.8e-67 1 196 [. 172 379 .. 172 380 .. 0.97
Alignments for each domain:
== domain 1 score: 213.0 bits; conditional E-value: 1.8e-67
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeearaelk..lygsDl 84
RgyR++ g+apLketLA+al+++agw+++ pl+DP+CGsGt+l+Ea+l++ niapg++++ +++ l+++a++ +r++l+ l+gsD
VIMSS12614 172 RGYRPALGNAPLKETLASALLTMAGWTPELPLYDPLCGSGTFLLEAGLQSLNIAPGKFQPGFCFqqwpdfdqdlwhsLLQTAKAGERDTLQapLWGSDG 270
9**************************************************************************************877778****** PP
UPF0020 85 drrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrk 183
dr+v+q+a++Na+++++g++i+++++++a+++ + + +v+++npPYG+r+g+++al ++Y+++++ lk+++rg ++++++++nkal+k ++ r++++
VIMSS12614 271 DREVIQAAKSNAQQCQLGGKIHWQKLNFADIE-PPAAEGVLICNPPYGKRIGQEEALGDFYQQIGDVLKQRFRG--WTAFVFSGNKALTKRIGLRTSAR 366
********************************.666789***********************************..*********************** PP
UPF0020 184 vkeknvklglllk 196
++++n+ l ++l
VIMSS12614 367 FPVNNGGLPCTLL 379
**********975 PP
Or compare VIMSS12614 to CDD or PaperBLAST