PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS128263 to PF06299 (DUF1045)

VIMSS128263 has 235 amino acids

Query:       DUF1045  [M=159]
Accession:   PF06299.16
Description: Protein of unknown function (DUF1045)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.1e-62  194.7   0.7    6.3e-62  194.4   0.7    1.1  1  VIMSS128263  


Domain annotation for each sequence (and alignments):
>> VIMSS128263  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  194.4   0.7   6.3e-62   6.3e-62       1     159 []      61     219 ..      61     219 .. 1.00

  Alignments for each domain:
  == domain 1  score: 194.4 bits;  conditional E-value: 6.3e-62
      DUF1045   1 TLkaPfrlaegvteaeLlaalaalaaelapfelpglevarlggflALvpaapsealqalAaacvraldefRaplseaelarrrperLterqralLerW 98 
                  T+kaPfrlaeg++ea+Ll++l+ ++ +++pf+lp+l var +++++Lvp++p+e l+ +Aa++v+++d++Raplseae++r +p+rL+++q ++L+rW
  VIMSS128263  61 TIKAPFRLAEGQSEAALLRDLMYFSGRQDPFTLPQLVVARQENVFSLVPERPCEVLHFFAARVVQEFDHYRAPLSEAEIERADPDRLSASQLTNLHRW 158
                  99************************************************************************************************ PP

      DUF1045  99 GyPyVleeFrFhmtLtgrldeeeraaleaalealfapllaeplavdelalfveeepgapFr 159
                  G P+V++eFrF m+Ltg +d+++++++e+a++++f+pll+++l++++lalf+e+epgapFr
  VIMSS128263 159 GSPHVMDEFRFQMSLTGGVDPSSSQRIERAVRKVFEPLLTRTLQFSSLALFIEDEPGAPFR 219
                  ************************************************************6 PP



Or compare VIMSS128263 to CDD or PaperBLAST