VIMSS1289893 has 381 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-62 195.1 0.0 8e-62 194.5 0.0 1.2 1 VIMSS1289893
Domain annotation for each sequence (and alignments):
>> VIMSS1289893
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 194.5 0.0 8e-62 8e-62 1 196 [. 161 367 .. 161 368 .. 0.96
Alignments for each domain:
== domain 1 score: 194.5 bits; conditional E-value: 8e-62
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear..aelklygsD 83
RgyR ++g+ap+ketLAa+l+rla+wk ++pl+DP+CGsGti+IEa+l+++niapg++refv+e ++ea + a +e+++y+sD
VIMSS1289893 161 RGYRLAQGEAPIKETLAASLIRLANWKGDTPLIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEqwnimpaniyddYRDEADKMADydKEIEVYASD 257
9***************************************************************************9999999999777888***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleera 180
+d+++v+ a++Nae+ g++d+i+fs++d+ L+ +++e ++++npPYGer+g+ +++e++Y+ +++ +k++ + +++++nk++e +++++a
VIMSS1289893 258 IDPEMVEIAKRNAEEVGLSDIIKFSVKDVNTLTIDTEEPVALIGNPPYGERIGDREEVEEMYRYIGKLMKQHPFL---STYILTSNKEFEYLVDRKA 351
*********************************7777777*******************************6555...89***************** PP
UPF0020 181 lrkvkeknvklglllk 196
++++k++n++++++++
VIMSS1289893 352 TKRRKLFNGYIECTYY 367
*************986 PP
Or compare VIMSS1289893 to CDD or PaperBLAST