VIMSS1291454 has 170 amino acids
Query: DUF308 [M=73]
Accession: PF03729.17
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.9e-25 74.3 63.5 1.9e-17 49.6 13.1 3.1 3 VIMSS1291454
Domain annotation for each sequence (and alignments):
>> VIMSS1291454
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.6 13.1 1.9e-17 1.9e-17 1 73 [] 14 86 .. 14 86 .. 0.98
2 ! 32.6 20.7 4.1e-12 4.1e-12 2 73 .] 73 140 .. 72 140 .. 0.91
3 ! 17.2 13.6 2.5e-07 2.5e-07 4 44 .. 129 169 .. 126 170 .] 0.94
Alignments for each domain:
== domain 1 score: 49.6 bits; conditional E-value: 1.9e-17
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
++G+ll+ l+++++++P + a+++liG+++l+ G++q+v +a++ gg+ + l++Gi++i++Gll++f
VIMSS1291454 14 IMGVLLLMLAVVIFTFPIENFYAITWLIGLFVLINGVIQIVYRRKAKALVGGNQNWILFMGIVDILFGLLVIF 86
79********************************************************************997 PP
== domain 2 score: 32.6 bits; conditional E-value: 4.1e-12
DUF308 2 lGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilyiiaGllllf 73
+Gi+ i++G+l++++ ga+++++++++++++++s+i +l+ +f + +g+ ++ ++++ +l i++G++llf
VIMSS1291454 73 MGIVDILFGLLVIFNVGASSAFFIYMFAFWFIFSSISGLF-TF--SG-SGSLKLISVIFNLLGIVFGVILLF 140
8**************************************6.66..44.566778899*************98 PP
== domain 3 score: 17.2 bits; conditional E-value: 2.5e-07
DUF308 4 illiilGilaliwPgaallalviliGvlllvsGivqlvaaf 44
+l i++G+++l++P++ +++++++i++ +++ G++ +v a+
VIMSS1291454 129 LLGIVFGVILLFNPLMGIVFISTMIAIAFVFVGVIYVVDAL 169
589********************************999886 PP
Or compare VIMSS1291454 to CDD or PaperBLAST