VIMSS133218 has 390 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-58 181.8 0.0 9.1e-58 181.3 0.0 1.2 1 VIMSS133218
Domain annotation for each sequence (and alignments):
>> VIMSS133218
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 181.3 0.0 9.1e-58 9.1e-58 1 195 [. 172 376 .. 172 378 .. 0.96
Alignments for each domain:
== domain 1 score: 181.3 bits; conditional E-value: 9.1e-58
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDl 84
RgyR +g+ap+ke++Aaa+++l++w +++pl+DP CGsGt+ IEa ++++++apgl r+f++e +++ea ++ ++el+ ++g D+
VIMSS133218 172 RGYRTEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEewnwisdrliqeVRTEAAKKVERELEldIMGCDI 269
9*************************************************************************999999999999777667****** PP
UPF0020 85 drrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralr 182
d+r+v+ a+ Na++agv++ i+f+q+ +++Lr +++ ++vi++npPYGerl++ + kLY e+++ ++ l++ ++ +++++++a+e+ ++++a +
VIMSS133218 270 DARMVEIAKANAQAAGVAGDITFKQMRVQDLR-SDKINGVIISNPPYGERLSDDAGVTKLYAEMGQVFAP-LKT--WSKFILTSDEAFESKYGSQADK 363
********************************.7779********************************9.999..********************** PP
UPF0020 183 kvkeknvklglll 195
k+k++n+ l+ +l
VIMSS133218 364 KRKLYNGTLKVDL 376
*******998765 PP
Or compare VIMSS133218 to CDD or PaperBLAST