VIMSS133307 has 646 amino acids
Query: DUF4838 [M=325]
Accession: PF16126.9
Description: Domain of unknown function (DUF4838)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.4e-16 44.9 3.5 3.4e-15 42.0 3.5 2.1 1 VIMSS133307
Domain annotation for each sequence (and alignments):
>> VIMSS133307
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 42.0 3.5 3.4e-15 3.4e-15 83 324 .. 257 523 .. 249 524 .. 0.81
Alignments for each domain:
== domain 1 score: 42.0 bits; conditional E-value: 3.4e-15
DUF4838 83 alldgkrsp.......sqlCltneevleiilekikaaldanpeaslisvsqnD.nndyCkceacaaldkkeGsrpsgvllefvNkvaeavkkefPdki 172
a ++gkr+ + l ++n++v + ++e ik + ++ p+++++ + +D n+ C+ce+c++ s+++++++N++ a+ +e d
VIMSS133307 257 AEINGKRELfntapilTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHIWLSDaRNNICECENCRQE------LVSDQYIRILNQLDRALTSEGLDTK 348
667999988888888888999********************************6699*******975......36789******************** PP
DUF4838 173 istlAYqytrkaPknikar..enViirlcs....................iecdrgkpleesek...........nkkfkeelegWskvak.rlyvwd 236
i l Y aP++ k+ e+ ++++ + ++ l +W+k k +v+d
VIMSS133307 349 ICFLLYHELLWAPQKEKLDnpERFTMMFAPitrtfemsyadvdfdnsiptP-----------KPymrnkiilpnsLEENLSYLFEWQKAFKgDSFVYD 435
*************98776533799******888888888774433332220...........22222222342223344556779*998764799*** PP
DUF4838 237 Yttnfanlla..pfPnihvlapnikfyaengvkgvfeedsaekhgdmaelraYllakllwdpeadvdaleddFlkgyYGaaAApyvrqyl 324
Y a++ + +++ ++++++ + +++g+++ ++ + g +++ +Y++ ++lw+ +++ + l+++++ + YG + + v +yl
VIMSS133307 436 YPLGRAHYGDlgYMKISQTIYRDVSYLSNLHLNGYISCQEL-RAGFPHNFPNYVMGQMLWKKTRSYEELIEEYFSALYG-ENWQSVVEYL 523
*999999865115677788******************9998.7888899******************************.7666666665 PP
Or compare VIMSS133307 to CDD or PaperBLAST