VIMSS139564 has 380 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.5e-70 220.9 0.0 1.4e-69 219.9 0.0 1.5 2 VIMSS139564
Domain annotation for each sequence (and alignments):
>> VIMSS139564
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.0 0.0 0.27 0.27 61 83 .. 92 114 .. 77 122 .. 0.70
2 ! 219.9 0.0 1.4e-69 1.4e-69 1 194 [. 165 368 .. 165 370 .. 0.99
Alignments for each domain:
== domain 1 score: -3.0 bits; conditional E-value: 0.27
UPF0020 61 fvyelkaeaeeearaelklygsD 83
+++++k ea++++ + ++++g+
VIMSS139564 92 QTFKVKVEAKRANVKSIQFVGLT 114
34457788888888888888865 PP
== domain 2 score: 219.9 bits; conditional E-value: 1.4e-69
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear.aelklygsDld 85
RgyR ++g+apL+e+LAa+l+ ag++ ++p++DP+CGsGti+IEaa+++a++apg++r+f +e l+++ae+++r ++++++gsD+d
VIMSS139564 165 RGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAARRAPGMMRRFGFEklqnfdktlwsdLRRRAEAQTRpVRAPIAGSDND 262
9*************************************************************************************9999******** PP
UPF0020 86 rrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrk 183
rr+vq+a +Na++agv+d+++fs+ada+++r ++ge++++v+npPYG rl++ +al++LY++++++lk++++g +l++++++++++ k+++ + rk
VIMSS139564 263 RRIVQTALDNARRAGVDDIVSFSVADAQSVR-PNGENGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKHYAG--WLAAMFTGDREMPKFMCLSPKRK 357
*******************************.****************************************9..*********************** PP
UPF0020 184 vkeknvklgll 194
++++n++++++
VIMSS139564 358 IPLYNGNIDCR 368
*********97 PP
Or compare VIMSS139564 to CDD or PaperBLAST