VIMSS144067 has 189 amino acids
Query: DUF308 [M=73]
Accession: PF03729.18
Description: Short repeat of unknown function (DUF308)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4e-27 80.6 34.7 4.5e-17 48.4 16.2 3.1 3 VIMSS144067
Domain annotation for each sequence (and alignments):
>> VIMSS144067
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 48.4 16.2 4.5e-17 4.5e-17 1 72 [. 26 97 .. 26 98 .. 0.97
2 ! 44.9 10.5 5.7e-16 5.7e-16 1 72 [. 84 153 .. 84 154 .. 0.95
3 ! 4.2 1.2 0.0029 0.0029 17 42 .. 157 182 .. 151 189 .] 0.80
Alignments for each domain:
== domain 1 score: 48.4 bits; conditional E-value: 4.5e-17
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllll 72
++++ll++ Gi++li+P+a+++al+++iG+lll+sGi+ +v+ +a+r+ + ++ + +l+G+ +i++G++++
VIMSS144067 26 IVAVLLLLGGIFCLINPLASGAALSMVIGILLLLSGIAMIVGMIANRSDNFWPMVAGILLGVAYIVMGYVFI 97
789********************************************99999999***************98 PP
== domain 2 score: 44.9 bits; conditional E-value: 5.7e-16
DUF308 1 llGilliilGilaliwPgaallalviliGvlllvsGivqlvaafaarkkegggfwllllsGilsiiaGllll 72
llG+++i+ G +++++P + ++ l+++++vl+ ++G+++l+++f ++ ++ g wl++l+G+l++++ +ll+
VIMSS144067 84 LLGVAYIVMGYVFITNPAIGMISLAVVLAVLFAFGGVLRLINGF--KDLKRPGAWLQILLGVLDLVITYLLV 153
68******************************************..8888999*************988775 PP
== domain 3 score: 4.2 bits; conditional E-value: 0.0029
DUF308 17 PgaallalviliGvlllvsGivqlva 42
P+++++++++l+G+ +l+s++ ++
VIMSS144067 157 PLMSITMVTTLVGIEMLFSSFSCFMV 182
999****************9887754 PP
Or compare VIMSS144067 to CDD or PaperBLAST