VIMSS144846 has 706 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-70 221.0 0.0 2e-65 206.3 0.0 2.3 2 VIMSS144846
Domain annotation for each sequence (and alignments):
>> VIMSS144846
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 206.3 0.0 2e-65 2e-65 1 196 [. 162 375 .. 162 376 .. 0.96
2 ! 12.5 0.0 5e-06 5e-06 79 170 .. 564 658 .. 526 665 .. 0.83
Alignments for each domain:
== domain 1 score: 206.3 bits; conditional E-value: 2e-65
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear.....aelk.l 79
RgyR+ +g+apLke+LAaa+++++gw++g+p++DPmCGsGt+lIEaa++++++apgl+r ++++ l +ea+ +ar + + +
VIMSS144846 162 RGYRDLTGQAPLKENLAAAIIQRSGWQPGTPMVDPMCGSGTLLIEAAMMASDRAPGLHRGHWGFtawnafnealwreLTTEAQVRARrglleTS-SrF 258
9************************************************************************999977888888877776333.36* PP
UPF0020 80 ygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkaleka 175
+gsD+drrv++ ar Na++agv++li+f++ d+ kL l+eg v+++++npPYGerl+s++al +L++ f+r +k + g + ++l++++ +l ++
VIMSS144846 259 FGSDIDRRVIEMARANARRAGVAELITFNANDISKLVnpLPEGPVGTVISNPPYGERLESEPALIALHNMFGRMMKTAFGG--WRLSLFSASPELLSC 354
************************************9999*************************************9999..*************** PP
UPF0020 176 leeralrkvkeknvklglllk 196
l+ ra r++k+kn++l++++k
VIMSS144846 355 LQLRADREFKAKNGPLDCVQK 375
******************997 PP
== domain 2 score: 12.5 bits; conditional E-value: 5e-06
UPF0020 79 lygsDldrrvvqgareNaekagvgdl.iefsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltaenk 170
+D+ r +++ a++N++ g++++ + qad + L ++++++dvi +pP +r++++ ++++ + +++elkr lr+ + +++++nk
VIMSS144846 564 TTTVDMSRTYLEWAEKNLRVNGLTGQqHRLIQADCLSwLSNTDEQFDVIFIDPPtfsNSKRMETTFDVQRDHLVLMKELKRLLRR--KGTIMFSNNK 658
5679***************99997751567888877625578889*********6444799************************..6666666665 PP
Or compare VIMSS144846 to CDD or PaperBLAST