PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS146857 to PF06295 (DUF1043)

VIMSS146857 has 134 amino acids

Query:       DUF1043  [M=123]
Accession:   PF06295.16
Description: Protein of unknown function (DUF1043)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.7e-55  171.9   0.0      3e-55  171.7   0.0    1.0  1  VIMSS146857  


Domain annotation for each sequence (and alignments):
>> VIMSS146857  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  171.7   0.0     3e-55     3e-55       1     122 [.       6     127 ..       6     128 .. 0.99

  Alignments for each domain:
  == domain 1  score: 171.7 bits;  conditional E-value: 3e-55
      DUF1043   1 vliglvvGliiGalvlrltnsklkkqkklekelekakaeleeyrqeledHFarsaelLeklakdyqkLyqhlaksseeLlpeltekdnpvkkkleekk 98 
                  +liglvvG++iGa+++r++n+kl++q+ l++elek+k++leeyrqel+ HFarsaelL+++a+dy++Lyqh+akss++Llp+l+ +dnp++++l+e++
  VIMSS146857   6 ALIGLVVGVVIGAVAMRFGNRKLRQQQVLQNELEKSKTDLEEYRQELVGHFARSAELLDNMARDYRQLYQHMAKSSNNLLPDLPLQDNPFRYRLTESE 103
                  69************************************************************************************************ PP

      DUF1043  99 aekeeeeaeeqPrDYsegasgllk 122
                  a++++++++ +PrDYsegasgll+
  VIMSS146857 104 ADNDQAPVKLPPRDYSEGASGLLR 127
                  **********************97 PP



Or compare VIMSS146857 to CDD or PaperBLAST