PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS14703 to PF14488 (DUF4434)

VIMSS14703 has 296 amino acids

Query:       DUF4434  [M=283]
Accession:   PF14488.10
Description: Domain of unknown function (DUF4434)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-72  229.7   0.0    3.1e-72  229.5   0.0    1.0  1  VIMSS14703  


Domain annotation for each sequence (and alignments):
>> VIMSS14703  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  229.5   0.0   3.1e-72   3.1e-72       1     281 [.      21     290 ..      21     292 .. 0.94

  Alignments for each domain:
  == domain 1  score: 229.5 bits;  conditional E-value: 3.1e-72
     DUF4434   1 isGtflqeikkdlqnlteaqWkeklaelkelgidtlilqnvgykkkatlpskllsnieiaakdlvelilkaAeelgmkvflglnydseywqhkakdaaa 99 
                 ++G+++q++++d+ ++t++qW+  +++l+ +g+dtl+lq+++y++++t+p++         ++l++++++aA+++g+k+++gln+d+e+++h+++++aa
  VIMSS14703  21 MKGIIWQPQNRDS-QVTDTQWQGLMSQLRLQGFDTLVLQWTRYGDAFTQPEQ---------RTLLFKRAAAAQQAGLKLIVGLNADPEFFMHQKQSSAA 109
                 79***********.**************************************.........89************************************ PP

     DUF4434 100 Leseaerglaiaeelakkygh.h.kafkGWYipyEldeykwakeakidllvealnelakalkklsaklpvlispflnsdlitlkeleklweeildksvd 196
                 Les+++r la++ ++a+ +++ +  +++GWYi++E+d+++w++ea++++l+++ln+++++++++sak pv+is+f+ +++++++ +++l+e+++++ v+
  VIMSS14703 110 LESYLNRLLAADLQQARLWSAaPgITPDGWYISAEIDDLNWRSEAARQPLLTWLNNAQRLISDVSAK-PVYISSFF-AGNMSPDGYRQLLEHVKATGVN 206
                 *********************7689****************************************99.********.********************** PP

     DUF4434 197 ivavqDgvGvgklnleelaeylqalrk..............fvekkagrqfWadgetFdaplkpasferllkqleaaksagvdkiitFeyshimnsPna 281
                 + +vqDg+Gv+kl++e++++ylqa+++              f        + ++g+tF+a  kp++ +++++ l++++s+g+d++    y+++++ P a
  VIMSS14703 207 V-WVQDGSGVDKLTAEQRERYLQASADcqspapasgvvyelF--------VAGKGKTFTA--KPKPDAEIASLLAKRSSCGKDTL----YFSLRYLPVA 290
                 *.*************************777766443322222........448999****..***********************....7777777776 PP



Or compare VIMSS14703 to CDD or PaperBLAST