PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS150081 to PF06722 (EryCIII-like_C)

VIMSS150081 has 371 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.18
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-66  208.6   0.1    2.9e-66  208.1   0.1    1.2  1  VIMSS150081  


Domain annotation for each sequence (and alignments):
>> VIMSS150081  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  208.1   0.1   2.9e-66   2.9e-66       1     145 []     227     367 ..     227     367 .. 0.99

  Alignments for each domain:
  == domain 1  score: 208.1 bits;  conditional E-value: 2.9e-66
                     TTTHHHHHTSSSEEEE---TTTTSS-SS--SSEEE--S--HHHHGGG-SEEEE---HHHHHHHHHTT--EEE---SHHHHHHHHHHHHHTSEEE- CS
  EryCIII-like_C   1 eelldelgevDaeivvtldararedlaslPdnvRlvdfvPlgvlLptcaaivhhGGaGstltalhaGvPqivlpdgaDrlvraqrvaelGaGial 95 
                     ++++d++gevDaei+++l+a+ar+dl+slP+nvRlvd++P+gv+L+++++++hhGGaG+tltalhaG+Pqiv+++gaDr+v+a++v+e+G+Gi++
     VIMSS150081 227 SWVMDSAGEVDAEIILHLPANARSDLRSLPPNVRLVDWLPMGVFLNGADGFIHHGGAGNTLTALHAGIPQIVFGQGADRPVNARAVVERGCGIIP 321
                     59********************************************************************************************* PP

                     -TTT--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHTS--HHHHHHHHHHH CS
  EryCIII-like_C  96 pkdeldadslaeavarvledpayreaaaklaeealaePkPtevvkklvel 145
                     +k++l+++++++    +l+++a+rea++++a+e++a+P+Ptev+kkl+++
     VIMSS150081 322 GKSGLTSSMINT----FLGNRALREASQEVAAEMAAQPCPTEVAKKLIAM 367
                     ************....********************************97 PP



Or compare VIMSS150081 to CDD or PaperBLAST