PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS151496 to PF01894 (UPF0047)

VIMSS151496 has 138 amino acids

Query:       UPF0047  [M=117]
Accession:   PF01894.21
Description: Uncharacterised protein family UPF0047
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      7e-40  122.1   0.0    7.9e-40  121.9   0.0    1.0  1  VIMSS151496  


Domain annotation for each sequence (and alignments):
>> VIMSS151496  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.9   0.0   7.9e-40   7.9e-40       2     116 ..      19     134 ..      18     135 .. 0.92

  Alignments for each domain:
  == domain 1  score: 121.9 bits;  conditional E-value: 7.9e-40
      UPF0047   2 iteeveeavke.sgikeGlvlvfvphttaaltinEnadpdvrkDleealeklvpedeeyrhnaegednadaHlkasllgssltvpvedgklalGtwqg 98 
                  it+e+++ ++    +++Gl+++ + ht+a+lt+nEn+dp+vr+D+e+++ k+vp+++ y+h++eg+d++++H+k+s+lg sl +pv++g+l+lGtwqg
  VIMSS151496  19 ITDEITDKLSGlPPVETGLLHLLLLHTSASLTLNENCDPTVRADMERHFLKTVPDNAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQG 116
                  89999999887789************************************************************************************ PP

      UPF0047  99 iylvEfdgpre...eRkvvvk 116
                  i+l E+         Rk++++
  VIMSS151496 117 IWLGEHR---IhggPRKIIAT 134
                  ******5...22235777765 PP



Or compare VIMSS151496 to CDD or PaperBLAST