PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS15536 to PF02698 (DUF218)

VIMSS15536 has 266 amino acids

Query:       DUF218  [M=133]
Accession:   PF02698.23
Description: DUF218 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.9e-19   55.5   0.0    3.7e-19   55.2   0.0    1.2  1  VIMSS15536  


Domain annotation for each sequence (and alignments):
>> VIMSS15536  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   55.2   0.0   3.7e-19   3.7e-19       2     105 ..      39     171 ..      15     211 .. 0.83

  Alignments for each domain:
  == domain 1  score: 55.2 bits;  conditional E-value: 3.7e-19
      DUF218   2 aivVLGaal.evlaaRldeaaelyreg..kiivsGg....................ggdeevseaeamaryleeelgvp.erilledksrnTyenarfs 76 
                 +++  G+a+ +     +d+a +++r++  ++++sGg                     ++++ +ea+++a+++++  ++p e+i++ed+s+n  enarfs
  VIMSS15536  39 CVILAGNAVmP----TIDAACKIARDQqiPLLISGGighsttflysaiaqhphyntIRTTGRAEATILADIAHQFWHIPhEKIWIEDQSTNCGENARFS 133
                 45555666656....9***********888**********************99973347899**********9899**66****************** PP

      DUF218  77 kell.....gk.svllVTsafHmpRalllfrkag...v 105
                  +ll     +  ++++V ++   +R++++fr++    +
  VIMSS15536 134 IALLnqaveRVhTAIVVQDPTMQRRTMATFRRMTgdnP 171
                 ********94459*******************933431 PP



Or compare VIMSS15536 to CDD or PaperBLAST