PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS15878 to PF07383 (DUF1496)

VIMSS15878 has 90 amino acids

Query:       DUF1496  [M=53]
Accession:   PF07383.16
Description: Protein of unknown function (DUF1496)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.8e-28   82.5   0.6    6.9e-28   82.3   0.6    1.1  1  VIMSS15878  


Domain annotation for each sequence (and alignments):
>> VIMSS15878  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   82.3   0.6   6.9e-28   6.9e-28       2      53 .]      34      89 ..      33      89 .. 0.92

  Alignments for each domain:
  == domain 1  score: 82.3 bits;  conditional E-value: 6.9e-28
     DUF1496  2 Vitagklvq....rvCyYedkaYseGAvikvegvlLqCareneqesngnLiWlelk 53
                V++ g+++     ++C+Y+d++YseGAvik eg+lLqC+r+ +++s+++L+W+++k
  VIMSS15878 34 VFSSGGQSAqpctQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLVWRRVK 89
                7777776666999****************************************996 PP



Or compare VIMSS15878 to CDD or PaperBLAST