PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS16188 to PF07411 (DUF1508)

VIMSS16188 has 110 amino acids

Query:       DUF1508  [M=48]
Accession:   PF07411.16
Description: Domain of unknown function (DUF1508)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.2e-49  149.4   1.9    1.8e-25   74.9   0.4    2.0  2  VIMSS16188  


Domain annotation for each sequence (and alignments):
>> VIMSS16188  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.5   0.1   2.4e-25   2.4e-25       2      48 .]      11      57 ..      10      57 .. 0.97
   2 !   74.9   0.4   1.8e-25   1.8e-25       1      48 []      61     108 ..      61     108 .. 0.98

  Alignments for each domain:
  == domain 1  score: 74.5 bits;  conditional E-value: 2.4e-25
     DUF1508  2 knGkfrFrLkaaNgevIatsegYsskaaaengIesVkknapdaeveD 48
                ++++frF+Lka+Nge+I+tse Y+sk +ae+gI+sV++n+p+ e+++
  VIMSS16188 11 SDNQFRFVLKAGNGETILTSELYTSKTSAEKGIASVRSNSPQEERYE 57
                89******************************************997 PP

  == domain 2  score: 74.9 bits;  conditional E-value: 1.8e-25
     DUF1508   1 DknGkfrFrLkaaNgevIatsegYsskaaaengIesVkknapdaeveD 48 
                 ++nGkf+F+LkaaN+++I++s++Y++ +++e gI+sVk n+++++v+D
  VIMSS16188  61 ASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGTSQTVKD 108
                 69********************************************98 PP



Or compare VIMSS16188 to CDD or PaperBLAST