PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS16231 to PF06998 (DUF1307)

VIMSS16231 has 153 amino acids

Query:       DUF1307  [M=123]
Accession:   PF06998.15
Description: Protein of unknown function (DUF1307)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.2e-49  152.0   6.7    4.9e-49  151.8   6.7    1.0  1  VIMSS16231  


Domain annotation for each sequence (and alignments):
>> VIMSS16231  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  151.8   6.7   4.9e-49   4.9e-49       1     123 []      28     150 ..      28     150 .. 0.99

  Alignments for each domain:
  == domain 1  score: 151.8 bits;  conditional E-value: 4.9e-49
     DUF1307   1 etktyeaeenGveikltytykgDkvlkqtaeskikysalgvetkeeakklleslsekYqgikGveekldykdekaiekvdidyekadldelkkllgist 99 
                 e+k+++a+ nG+ei++ty ykgDkvlkq++e+ki+++++g++tke+a+k+le+ls+kY++i+Gveekl+y+d++a+e+v+id+ek+d+++l+ ++gi++
  VIMSS16231  28 ESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTIDMEKVDFKALQGISGINV 126
                 79************************************************************************************************* PP

     DUF1307 100 dgedtskgiSlkkteklleaqGyk 123
                 ++ed++kgi+++++e +++a+G+k
  VIMSS16231 127 SAEDAKKGITMAQMELVMKAAGFK 150
                 ***********************7 PP



Or compare VIMSS16231 to CDD or PaperBLAST