PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS16402 to PF04217 (DUF412)

VIMSS16402 has 151 amino acids

Query:       DUF412  [M=141]
Accession:   PF04217.17
Description: Protein of unknown function, DUF412
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.3e-61  192.1   0.3    2.6e-61  191.9   0.3    1.0  1  VIMSS16402  


Domain annotation for each sequence (and alignments):
>> VIMSS16402  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.9   0.3   2.6e-61   2.6e-61       1     141 []      11     149 ..      11     149 .. 0.99

  Alignments for each domain:
  == domain 1  score: 191.9 bits;  conditional E-value: 2.6e-61
      DUF412   1 llktlkdGqrYlktwPlekkLaalfpesrvikatklaikvmPalavlalllqlalaksealpqavatalfalslPlQGlyWLGkRaetpLppsllswye 99 
                 +++ +++Gq+Y ktwPlek+La++f+e+rvik+t++ai++mP +av++l++q+al +  +l +avatalfalslP+QGl+WLGkR+ tpLpp++l+w++
  VIMSS16402  11 FFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMTRYAIRFMPPIAVFTLCWQIALGG--QLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAILNWFY 107
                 6889****************************************************9..9*************************************** PP

      DUF412 100 eikeklkeegaalkplkekpsYqelaelLkkafeqldksfle 141
                 e++ kl+e+g+ l+p++ kp+Yq la++Lk+af+qldk+fl+
  VIMSS16402 108 EVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLD 149
                 ****************************************85 PP



Or compare VIMSS16402 to CDD or PaperBLAST