PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS16482 to PF10810 (DUF2545)

VIMSS16482 has 80 amino acids

Query:       DUF2545  [M=80]
Accession:   PF10810.12
Description: Protein of unknown function (DUF2545)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-45  138.7  11.2    3.1e-45  138.6  11.2    1.0  1  VIMSS16482  


Domain annotation for each sequence (and alignments):
>> VIMSS16482  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  138.6  11.2   3.1e-45   3.1e-45       1      80 []       1      80 []       1      80 [] 0.99

  Alignments for each domain:
  == domain 1  score: 138.6 bits;  conditional E-value: 3.1e-45
     DUF2545  1 miYllvilalailavslyigsvlgavsaissllgmviLaaliyfltlwltdGnelvsGilllLsPaiGllivfmvsygkR 80
                mi l+++lal+i++vs+yig+vl++vsa+ss++gmviLaaliy++t+wlt+Gnelv+Gi+++L+Pa+Gl+i+fmv+yg+R
  VIMSS16482  1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR 80
                899***************************************************************************99 PP



Or compare VIMSS16482 to CDD or PaperBLAST