PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS16694 to PF01817 (CM_2)

VIMSS16694 has 386 amino acids

Query:       CM_2  [M=79]
Accession:   PF01817.25
Description: Chorismate mutase type II
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.1e-23   66.8   2.0    2.2e-22   65.6   2.0    1.7  1  VIMSS16694  


Domain annotation for each sequence (and alignments):
>> VIMSS16694  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   65.6   2.0   2.2e-22   2.2e-22       1      79 []      11      89 ..      11      89 .. 0.98

  Alignments for each domain:
  == domain 1  score: 65.6 bits;  conditional E-value: 2.2e-22
        CM_2  1 RkeIdeiDrelleLlaeRmelakeiaeyKkenglpvldpeReeevlerlregaeelgldpeavekifreiisesralQk 79
                R++I ++D++ll+LlaeR ela e++++K  ++ pv+d +Re+++lerl    ++++ld+++++++f+ ii+ s+  Q+
  VIMSS16694 11 REKISALDEKLLALLAERRELAVEVGKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQ 89
                99****************************9999*****************9999*******************99985 PP



Or compare VIMSS16694 to CDD or PaperBLAST