VIMSS180642 has 613 amino acids
Query: TIGR00110 [M=543]
Accession: TIGR00110
Description: ilvD: dihydroxy-acid dehydratase
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.3e-256 837.5 2.7 2.7e-256 837.3 2.7 1.0 1 VIMSS180642
Domain annotation for each sequence (and alignments):
>> VIMSS180642
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 837.3 2.7 2.7e-256 2.7e-256 2 542 .. 20 610 .. 19 611 .. 0.99
Alignments for each domain:
== domain 1 score: 837.3 bits; conditional E-value: 2.7e-256
TIGR00110 2 arallkatGlkdedlekPiiavvnsyteivPghvhlkdlaklvkeeieaaGgvakefntiavsDGiamgheGmkysLpsreiiaDsvetvvkahalDa 99
ar l++atG+kded++kPiiavvns+t++vPghvhlkdl++lv++eie+aGgvakefntiav+DGiamgh+Gm+ysLpsre+iaDsve++v+ah++Da
VIMSS180642 20 ARGLWRATGMKDEDFGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIESAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRELIADSVEYMVNAHCADA 117
689*********************************************************************************************** PP
TIGR00110 100 lvvissCDkivPGmlmaalrlniPaivvsGGpmeagktklsekidlvdvfeavgeyaagklseeeleeiersacPtagsCsGlftansmacltealGl 197
+v+is+CDki+PGmlmaalrlniP+++vsGGpmeagk+ + ++++d+++a++++a+++ ++e++++iersacPt+gsCsG+ftansm+cltealGl
VIMSS180642 118 MVCISNCDKITPGMLMAALRLNIPVVFVSGGPMEAGKVVWEDSVKKLDLVDAMVAAADDHYTDEQVKAIERSACPTCGSCSGMFTANSMNCLTEALGL 215
************************************************************************************************** PP
TIGR00110 198 slPgsstllatsaekkelakksgkrivelvkknik.......PrdiltkeafenaitldlalGGstntvLhllaiakeagvklslddfdrlsrkvPll 288
slPg++++lat+a++k+l+ ++g+ iv+l +++++ Pr+i+t +afena+tld+a+GGstntvLhlla+a+ea++++++ d+drlsr+vP+l
VIMSS180642 216 SLPGNGSTLATHADRKRLFVEAGHLIVDLARRYYEqddesvlPRSIATFSAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMADIDRLSRRVPVL 313
************************************************************************************************** PP
TIGR00110 289 aklkPsgkkv.iedlhraGGvsavlkeldkegllhkdaltvtGktlaetlekvkvlr...................................vdqdvi 350
+k++P+ ++v +ed+h+aGG++++l++ld++gll + + tv +tla+ l++ +v+r ++ vi
VIMSS180642 314 CKVAPAVSSVhMEDVHHAGGIMGILGQLDNAGLLTTSIPTVHSETLAKALDHWDVTRtnsemvhkfysaapggvptqvafsqerrfdkvdtdREKGVI 411
******99988*********************************************9*******************************77544445** PP
TIGR00110 351 rsldnpvkkegglavLkGnlaeeGavvkiagveedilkfeGpakvfeseeealeailggkvkeGdvvviryeGPkGgPGmremLaPtsalvglGLgkk 448
+s++++++++gglavL+Gnlae+G++vk+agv+++ilkf Gpa++fes++ a+ +il+gk+k Gd+v+iryeGP+GgPGm+emL+Pts+l++ GLgk+
VIMSS180642 412 HSKEHAFSQDGGLAVLYGNLAEDGCIVKTAGVDDSILKFSGPARIFESQDSAVLGILNGKIKPGDIVLIRYEGPRGGPGMQEMLYPTSYLKSKGLGKA 509
************************************************************************************************** PP
TIGR00110 449 vaLitDGrfsGgtrGlsiGhvsPeaaegGaialvedGDkikiDienrkldlevseeelaerrakakkkea.......revkgaLakyaklvssadkGa 539
+aLitDGrfsGg++GlsiGhvsPeaaegG+i+lv++GD+i iDi+nrk++l+v+++ laerra++++ ++ r+++ aL++ya +++sa +Ga
VIMSS180642 510 CALITDGRFSGGSSGLSIGHVSPEAAEGGTIGLVREGDIIDIDIPNRKIHLAVDDATLAERRAEQDAAGWkpaeerkRKISTALKAYAAMATSAARGA 607
*******************************************************************9999999999999****************** PP
TIGR00110 540 vld 542
v++
VIMSS180642 608 VRK 610
*86 PP
Or compare VIMSS180642 to CDD or PaperBLAST