VIMSS1878 has 584 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-39 122.5 0.1 2.8e-39 121.4 0.0 1.6 2 VIMSS1878
Domain annotation for each sequence (and alignments):
>> VIMSS1878
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 121.4 0.0 2.8e-39 2.8e-39 2 195 .. 14 226 .. 13 230 .. 0.80
2 ? -2.9 0.0 0.35 0.35 116 143 .. 305 332 .. 284 355 .. 0.49
Alignments for each domain:
== domain 1 score: 121.4 bits; conditional E-value: 2.8e-39
GmrSD_N 2 edllskeksg.fliPdyQRgyvWdeeqvedLiedikelrgyplGsivlw............keaededgkyeviDGQQRltTltlllka........... 77
+ ll++++sg + +Pd+QR++vWd+ +v+dL++++ +rgyp+G++++w + +++ +++ v+DGQQRlt+l+ ++k+
VIMSS1878 14 GGLLENIDSGeIGLPDIQRPFVWDTTRVRDLFDSM--YRGYPIGTLLFWengfpgehrtigTGPKKKVPRLLVVDGQQRLTALYSVMKGvpivdknfrqr 111
678999999999***********************..********************9996444555**********************88776665444 PP
GmrSD_N 78 .leed.....ekekeeeeklklekreedkdffekllenekeelesleklkelngkkfkdlseeekseseknlikayelikekaieklklveieldsedde 171
l + +ek e ++ ++e++ ++ ++++ l+++ l + ++ ++ ++ + l+eee+++ ++++k+++l + + ++ +e++ +++e
VIMSS1878 112 rL--RiafnpLEEKFEVTNTSIERDPTWISDISILWQEGFA-LYDFISSFMKRLEERRGLTEEERQRIPRSIQKLVNLVN------YPMTALEISASATE 202
41..1333334444444444555555566666655655555.45556666666777888899999999999999999998......59************ PP
GmrSD_N 172 deafeiFerlNsrGvpLsaadllk 195
+++ eiF r+NsrG+ L++ad +
VIMSS1878 203 EQVSEIFVRINSRGRTLNQADFIL 226
*********************875 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.35
GmrSD_N 116 sleklkelngkkfkdlseeekseseknl 143
+++ ++ +k +k++ + ++++ ++
VIMSS1878 305 RRDEQFDRLEKAQKEVLNLQNWHDFLKV 332
3333333333333333333333333333 PP
Or compare VIMSS1878 to CDD or PaperBLAST