VIMSS1878 has 584 amino acids
Query: DUF262 [M=199]
Accession: PF03235.18
Description: Protein of unknown function DUF262
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-39 121.9 0.1 4.4e-39 120.8 0.0 1.6 2 VIMSS1878
Domain annotation for each sequence (and alignments):
>> VIMSS1878
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 120.8 0.0 4.4e-39 4.4e-39 2 195 .. 14 226 .. 13 230 .. 0.80
2 ? -2.9 0.0 0.34 0.34 115 143 .. 304 332 .. 284 355 .. 0.48
Alignments for each domain:
== domain 1 score: 120.8 bits; conditional E-value: 4.4e-39
DUF262 2 edllskkksg.fliPdyQRgyvWdeeqvedLiedikelrgyplGsivlw............keaededgkyeviDGQQRltTltlllka........... 77
+ ll++++sg + +Pd+QR++vWd+ +v+dL++++ +rgyp+G++++w + +++ +++ v+DGQQRlt+l+ ++k+
VIMSS1878 14 GGLLENIDSGeIGLPDIQRPFVWDTTRVRDLFDSM--YRGYPIGTLLFWengfpgehrtigTGPKKKVPRLLVVDGQQRLTALYSVMKGvpivdknfrqr 111
678999999999***********************..********************9996444555**********************88776665444 PP
DUF262 78 .leed.....ekekeeeeklklekreedkdffekllenekeelekleklkelngkkfkdlseeekseseknlikayelikekaieklklveielddedde 171
l + +ek e ++ ++e++ ++ ++++ l+++ + + ++ ++ ++ + l+eee+++ ++++k+++l + + ++ +e++ +++e
VIMSS1878 112 rL--RiafnpLEEKFEVTNTSIERDPTWISDISILWQEGFAL-YDFISSFMKRLEERRGLTEEERQRIPRSIQKLVNLVN------YPMTALEISASATE 202
41..13333344444445555555556666666666666555.4555666666677888899999999999999999997......59************ PP
DUF262 172 deafeiFerlNsrGvpLsaadllk 195
+++ eiF r+NsrG+ L++ad +
VIMSS1878 203 EQVSEIFVRINSRGRTLNQADFIL 226
*********************886 PP
== domain 2 score: -2.9 bits; conditional E-value: 0.34
DUF262 115 ekleklkelngkkfkdlseeekseseknl 143
e +++ ++ +k +k++ + ++++ ++
VIMSS1878 304 ERRDEQFDRLEKAQKEVLNLQNWHDFLKV 332
33333333333333333333333333333 PP
Or compare VIMSS1878 to CDD or PaperBLAST