VIMSS188707 has 365 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.5e-44 138.1 0.0 2.6e-43 134.2 0.0 2.1 1 VIMSS188707
Domain annotation for each sequence (and alignments):
>> VIMSS188707
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 134.2 0.0 2.6e-43 2.6e-43 1 195 [. 191 358 .. 191 360 .. 0.95
Alignments for each domain:
== domain 1 score: 134.2 bits; conditional E-value: 2.6e-43
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaek 98
R +Rv+++pa+Lk+++A a+++la+++ g + lDPmCGsGtilIE al + ++g+++ r+++ ga+ Na +
VIMSS188707 191 RPWRVYDHPAHLKASIANAMIELAELDGG-SVLDPMCGSGTILIELALRRYSGE------------------------IIGIEKYRKHLIGAEMNALA 263
78***********************9755.678*************99776666........................9******************* PP
UPF0020 99 agvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklglll 195
agv d+i+f q da++L + ++vd ++n+PYG ++g+k ++ +LY +f +el++vl++ r v++t+e+ka+e+a++e+ ++ ++ + + +g+l+
VIMSS188707 264 AGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEK--RGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLM 358
******************9999**************************************..************************99999888876 PP
Or compare VIMSS188707 to CDD or PaperBLAST