VIMSS18932 has 658 amino acids
Query: GmrSD_N [M=199]
Accession: PF03235.19
Description: GmrSD restriction endonuclease, N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-28 84.3 5.2 6.8e-28 84.3 5.2 4.6 2 VIMSS18932
Domain annotation for each sequence (and alignments):
>> VIMSS18932
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 84.3 5.2 6.8e-28 6.8e-28 39 198 .. 2 172 .. 1 173 [. 0.68
2 ? -24.7 33.5 1 1 81 182 .. 514 599 .. 175 612 .. 0.75
Alignments for each domain:
== domain 1 score: 84.3 bits; conditional E-value: 6.8e-28
GmrSD_N 39 rgyplGsivlw.keaededgkyeviDGQQRltTltlllka............leedekekeeeeklklekreedkdffekllenekeelesleklkeln 124
+g+++Gsi+ + + ++ +++++ +iDGQQRltT+tlll a +++ ke+e++l +++++ dk+f l e++k++l+sl+++++++
VIMSS18932 2 NGHFIGSILYVlDSNTHSNNTLLIIDGQQRLTTITLLLIAlrnhlseeveilE--KFSRKEIESYLINSNKDGDKKFRLILSESDKDTLLSLIDKNKRK 98
69********86555555**********************7766655443320..24444444444444445555555555555555555533333332 PP
GmrSD_N 125 gkkfkdlseeekseseknlikayelikek..........ai...eklklveieldseddedeafeiFerlNsrGvpLsaadllkall 198
se ++++++el++++ ++ +kl +v+i+ld+ +d+ + iFe++Ns+ ++L+++dl+++++
VIMSS18932 99 -----------PSEPSVKIVENFELFEKWisentdkletIFkglKKLMIVWISLDK--GKDDPQLIFESMNSKDIELTQTDLIRNYI 172
...........255555666666666666666666666511455889********5..5669***********************97 PP
== domain 2 score: -24.7 bits; conditional E-value: 1
GmrSD_N 81 d..ekekeeeeklklekreedkdffekllenekeelesleklkelngkkfkdlseeekseseknlikayelikek........ai....eklklveiel 165
+ +kek+e+e++kl+k+++ d ++ +++++ e l + +k k l+e +i k+++v i++
VIMSS18932 514 KkeKKEKKEKEEYKLKKEKKVYDLSSYKFSSDSRE------LFDILREKIKALDE-------------------RitekfnqkYIaykfCKISFVDIVV 587
01122222222222222222222222222222211......11222222222222...................1222233322211112234444444 PP
GmrSD_N 166 dseddedeafeiFerlN 182
+ ++ +++ ++N
VIMSS18932 588 Q-----EKGLKLYLKMN 599
3.....33555555555 PP
Or compare VIMSS18932 to CDD or PaperBLAST