VIMSS18932 has 658 amino acids
Query: GmrSD_C [M=138]
Accession: PF07510.16
Description: GmrSD restriction endonucleases, C-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-30 92.5 5.0 1.2e-30 92.5 5.0 2.4 3 VIMSS18932
Domain annotation for each sequence (and alignments):
>> VIMSS18932
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 0.1 0.56 0.56 96 124 .. 186 214 .. 182 223 .. 0.63
2 ! 92.5 5.0 1.2e-30 1.2e-30 2 138 .] 360 493 .. 359 493 .. 0.89
3 ? -2.9 1.0 0.32 0.32 109 116 .. 524 531 .. 509 571 .. 0.54
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 0.56
GmrSD_C 96 nkdfleKrekyeksclyltrkladkdkwn 124
n+ + e +e+++ +r ++++ + +
VIMSS18932 186 NQYWRAMEERFEQNETLFNRFVRHYLTIK 214
56666666667777777777766665555 PP
== domain 2 score: 92.5 bits; conditional E-value: 1.2e-30
GmrSD_C 2 prddefkrdltdkkfykksskklryillgrleedlyeedeikgsskketiEHilPqslaekw..gageddeeereelvndlgNLtlltgslNsaisnkd 98
p +defk+ + + +fyk +++k y+l+ rle+ + +++ +++ k +iEHi+Pq+l+ +w + ge + +e++++++gNLtl+ +Ns++sn++
VIMSS18932 360 PNNDEFKKLFITIDFYKFKKNK--YFLE-RLENFDT-KEPVDTQ-K-CNIEHIMPQTLTPEWqrDLGENFQAIHEKYLHTIGNLTLTG--YNSKYSNNS 450
899**************87655..****.***6666.4455554.3.45********999998899999999****************..********* PP
GmrSD_C 99 fleKre...kyeksclyltrkladkdkwneeviearqeaLakv 138
f+eKr+ ++++s+l+l++ l+d ++++e++ie+r+ +La++
VIMSS18932 451 FQEKRDmekGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADW 493
******8888999**************************9986 PP
== domain 3 score: -2.9 bits; conditional E-value: 0.32
GmrSD_C 109 sclyltrk 116
+++l+++
VIMSS18932 524 EEYKLKKE 531
33333332 PP
Or compare VIMSS18932 to CDD or PaperBLAST