PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS189406 to PF01817 (CM_2)

VIMSS189406 has 76 amino acids

Query:       CM_2  [M=79]
Accession:   PF01817.25
Description: Chorismate mutase type II
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      4e-22   64.7   8.7    8.7e-22   63.7   8.7    1.5  1  VIMSS189406  


Domain annotation for each sequence (and alignments):
>> VIMSS189406  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.7   8.7   8.7e-22   8.7e-22       1      78 [.       8      74 ..       8      75 .. 0.96

  Alignments for each domain:
  == domain 1  score: 63.7 bits;  conditional E-value: 8.7e-22
         CM_2  1 RkeIdeiDrelleLlaeRmelakeiaeyKkenglpvldpeReeevlerlregaeelgldpeavekifreiisesralQ 78
                 RkeId+iD++++ Ll++R+e+a++i+++Kke +lp+ d++Reeevl+r+ e            ++if++i++ s+++Q
  VIMSS189406  8 RKEIDKIDNQIISLLKKRLEIAQAIGKIKKELNLPIEDRKREEEVLRRAGE-----------FREIFEKILEVSKDVQ 74
                 9************************************************99...........6799999999999998 PP



Or compare VIMSS189406 to CDD or PaperBLAST