VIMSS19110 has 257 amino acids
Query: LpxR [M=322]
Accession: PF09982.13
Description: Outer membrane protein LpxR
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-58 182.5 0.1 6.4e-58 182.2 0.1 1.0 1 VIMSS19110
Domain annotation for each sequence (and alignments):
>> VIMSS19110
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 182.2 0.1 6.4e-58 6.4e-58 3 245 .. 6 256 .. 4 257 .] 0.93
Alignments for each domain:
== domain 1 score: 182.2 bits; conditional E-value: 6.4e-58
LpxR 3 lallllaspalAqe.......keekstlslqleNDlfagegsDryYTnGlrlswlsaeeek..kwlrelarllkplsksaesekrlglslgQkiyTPsd 92
+++lll + a+A+e ++++++++l +eND++ + D+yYT+G ++ + ++e + + +++++++l +++++ + +r+g+sl+Q +yTPs
VIMSS19110 6 ILCLLLGVFAWAKEdiptpltPSKRYSINLMTENDGYINPYIDEYYTAGNQIGFSTKEFDFskNKAMKWTSYL-GFFNKSPRVTRFGISLAQDMYTPSL 103
4455555578*********999999*************9989***********99998887776677888887.77889******************88 PP
LpxR 93 ieaedpdp.dDrPYAGylylelglqsetkdeldslelslGvvGpaslaeqvQklvHkligseepkGWdnQlknepavnlsyerekrllekeadsgleld 190
+++ + d +PY Gyl ++l++++++k+ ++ ++lslG++G++sla q+Q+l+Hk+ +++++ GW++Qlkne++++l y+ k++ +++ ++++
VIMSS19110 104 KNRKLVHLhDNHPYGGYLRVNLNVYNRHKTFMELFTLSLGTTGQDSLAAQTQRLIHKWGHDPQFYGWNTQLKNEFIFELHYQLLKKV-PLLKTRFFSME 201
887777664779***************************************************************************.9********** PP
LpxR 191 liphagaalGnvkteasagltlRlGknLpkdfgsarirpgseafapskskfgwyv 245
l+p ++++lGn++ + ++g ++R+G+nL++d+g ++++++ + ++p+++kf++y+
VIMSS19110 202 LMPGFNVELGNARDYFQLGSLFRAGYNLDADYGVNKVNTAFDGGMPYSDKFSIYF 256
***************************************99999999****9997 PP
Or compare VIMSS19110 to CDD or PaperBLAST