PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS200551 to PF07290 (YqiJ_OB)

VIMSS200551 has 211 amino acids

Query:       YqiJ_OB  [M=64]
Accession:   PF07290.15
Description: Inner membrane protein YqiJ, OB-fold
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.3e-24   70.2   0.0    8.6e-24   69.7   0.0    1.2  1  VIMSS200551  


Domain annotation for each sequence (and alignments):
>> VIMSS200551  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   69.7   0.0   8.6e-24   8.6e-24       2      63 ..     145     206 ..     144     207 .. 0.97

  Alignments for each domain:
  == domain 1  score: 69.7 bits;  conditional E-value: 8.6e-24
      YqiJ_OB   2 lvGrvatitlGtArrgspAeAkvkDehgqtHYvmVEPdeedevfeeGseVllvrkegalfra 63 
                  l G v+titlG A +g+p eA v+D+h q+HYv+VEP++++ +f++G++V+l+++eg ++ a
  VIMSS200551 145 LSGYVGTITLGCAIKGMPSEAVVRDKHQQKHYVLVEPETSGIEFASGTQVVLLKREGRVWSA 206
                  7899*******************************************************987 PP



Or compare VIMSS200551 to CDD or PaperBLAST