VIMSS2017283 has 385 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.3e-58 181.8 0.0 8.8e-58 181.4 0.0 1.2 1 VIMSS2017283
Domain annotation for each sequence (and alignments):
>> VIMSS2017283
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 181.4 0.0 8.8e-58 8.8e-58 1 195 [. 167 371 .. 167 373 .. 0.96
Alignments for each domain:
== domain 1 score: 181.4 bits; conditional E-value: 8.8e-58
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsD 83
RgyR +g+ap+ke++Aaa+++l++w +++pl+DP CGsGt+ IEa ++++++apgl r+f++e +++ea ++ ++el+ ++g D
VIMSS2017283 167 RGYRTEKGGAPIKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAVMIARKMAPGLRRSFAFEewnwisdrliqeVRTEAAKKVERELEldIMGCD 263
9*************************************************************************999999999999777667***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleera 180
+d+r+v+ a+ Na++agv++ i+f+q+ +++Lr +++ ++vi++npPYGerl++ + kLY e+++ ++ l++ ++ +++++++a+e+ ++++a
VIMSS2017283 264 IDARMVEIAKANAQAAGVAGDITFKQMRVQDLR-SDKINGVIISNPPYGERLSDDAGVTKLYAEMGQVFAP-LKT--WSKFILTSDEAFESKYGSQA 356
*********************************.7779********************************9.999..******************** PP
UPF0020 181 lrkvkeknvklglll 195
+k+k++n+ l+ +l
VIMSS2017283 357 DKKRKLYNGTLKVDL 371
*********998765 PP
Or compare VIMSS2017283 to CDD or PaperBLAST