VIMSS204294 has 388 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-48 149.4 0.0 7.3e-48 149.0 0.0 1.1 1 VIMSS204294
Domain annotation for each sequence (and alignments):
>> VIMSS204294
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 149.0 0.0 7.3e-48 7.3e-48 1 196 [. 176 383 .. 176 384 .. 0.92
Alignments for each domain:
== domain 1 score: 149.0 bits; conditional E-value: 7.3e-48
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear.....aelklyg 81
RgyR + g apLke+LAa+l++l+gw+ pl+DP+CGsG +lIEa +++ + apgl r+f e +a++++r + ++++g
VIMSS204294 176 RGYRAAMGAAPLKENLAAGLIQLTGWDGRMPLVDPFCGSGILLIEAVTMALQQAPGLGRQFGLEgwadfdrelwerE--HARARQRrrsdlDLAPVVG 271
9***********************************************************************99552..4444444345566667*** PP
UPF0020 82 sDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleer 179
+ d+ + ++ar+N ++ag+++li++ + + + +l+ g +++v+npPYG r+gs+ +le+LY+ +++ + ++ +g + + l+++n +l+ al+ +
VIMSS204294 272 YEQDPLIADQARDNIRAAGLDGLISIHSGSFEQQTLPPG-PGLLVCNPPYGHRVGSEDDLEQLYRLLGSFVREQASG--WQLWLLSGNASLTGALRLK 366
*****************************9999886664.89**************************999997777..******************* PP
UPF0020 180 alrkvkeknvklglllk 196
a+r++++ n+ +++++
VIMSS204294 367 ASRRIPVSNGGIDCRWL 383
**************985 PP
Or compare VIMSS204294 to CDD or PaperBLAST