VIMSS2092798 has 718 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-49 153.3 0.0 1.3e-47 148.2 0.0 2.3 2 VIMSS2092798
Domain annotation for each sequence (and alignments):
>> VIMSS2092798
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 148.2 0.0 1.3e-47 1.3e-47 1 194 [. 163 375 .. 163 378 .. 0.87
2 ! 2.7 0.0 0.0049 0.0049 67 130 .. 568 634 .. 544 656 .. 0.75
Alignments for each domain:
== domain 1 score: 148.2 bits; conditional E-value: 1.3e-47
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgep.....llDPmCGsGtilIEaallganiapgll.refvye............lkaeaeeearaelk. 78
R yR+f+g+apLke+LAaa++ agw ++ + l+DPmCGsGtilIEaal+++niap ll +ef+++ l++ a+++++++
VIMSS2092798 163 RSYRQFQGQAPLKESLAAAILIKAGWLEELKkhqpiLIDPMCGSGTILIEAALMAKNIAPVLLnKEFKIFnskfhnkelwdnLLEIAKNSQKVTNAi 259
89************************766422223389**********************97614555559*******9997666666666644445 PP
UPF0020 79 lygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerl..gskkalekLYseflrelkrvlrgggrlvlltaenkale 173
++g+D+d++v+++a++N +agv+d ++++ d+++L+++ ++ ++ivtnpPYGerl ++ +l ++++ f+++l++ + g + v+++++ +
VIMSS2092798 260 ICGFDIDNNVLDKAQRNIYQAGVEDVVTVKRQDIRDLENEFESEGLIVTNPPYGERLygDQLDELLDIFNGFGDRLSQDFYG--WKVAVLTSFADSI 354
9*************************************9999**************943345677999************99..************* PP
UPF0020 174 kaleeralrkvkeknvklgll 194
k ++ r++++ k +n+ +++
VIMSS2092798 355 KEMQLRTTKRNKFYNGAIETI 375
***********9999998875 PP
== domain 2 score: 2.7 bits; conditional E-value: 0.0049
UPF0020 67 aeaeeear.aelklygsDldrrvvqgareNaekagvg.dliefsqada.akLrlkegevdvivtnpP 130
++a +a + +k +D+ + +++ +++N e +++ ++ +f qad L+ +++++dvi +pP
VIMSS2092798 568 CTASVHAAlKGAKTTSVDMSNTYLEWGKNNFELNKLDiKKHSFIQADCiSWLKTNKDKFDVIFLDPP 634
5555555556677899999*********99887766533455666665155777788*********9 PP
Or compare VIMSS2092798 to CDD or PaperBLAST