PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2124712 to PF09313 (DUF1971)

VIMSS2124712 has 290 amino acids

Query:       DUF1971  [M=80]
Accession:   PF09313.15
Description: Domain of unknown function (DUF1971)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-39  120.7   0.1    2.8e-38  116.1   0.4    2.2  2  VIMSS2124712  


Domain annotation for each sequence (and alignments):
>> VIMSS2124712  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.1   0.4   2.8e-38   2.8e-38       1      80 []       8      88 ..       8      88 .. 0.99
   2 ?    1.9   0.0     0.012     0.012       5      29 ..     199     224 ..     196     229 .. 0.80

  Alignments for each domain:
  == domain 1  score: 116.1 bits;  conditional E-value: 2.8e-38
       DUF1971  1 krtpvfteetlPaallekHnTkaGtwgkltVleGelkfrildedgeeeeelvlspe.qpaivePqvwHkveplsddvefqv 80
                  k++pv+t+++lP++++ekHnTk+Gtw+klt+l+Gelkf+ l+e+gee ++++++pe qp++vePq wHkve+lsdd+e+q+
  VIMSS2124712  8 KQMPVWTKDSLPQMFQEKHNTKEGTWAKLTILKGELKFYELTEQGEEVNSVIFTPEnQPPFVEPQLWHKVEALSDDLECQL 88
                  89*****************************************************************************97 PP

  == domain 2  score: 1.9 bits;  conditional E-value: 0.012
       DUF1971   5 vfteetlPaalle.kHnTkaGtwgkl 29 
                   + ++e +Pa + + + nTk G +  +
  VIMSS2124712 199 FLNRERIPAIIENmQKNTKVGGYNLI 224
                   5688999*99987356******9987 PP



Or compare VIMSS2124712 to CDD or PaperBLAST