PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS216103 to PF04379 (DUF525)

VIMSS216103 has 126 amino acids

Query:       DUF525  [M=87]
Accession:   PF04379.18
Description: ApaG domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.1e-39  118.3   0.1    8.8e-39  118.0   0.1    1.1  1  VIMSS216103  


Domain annotation for each sequence (and alignments):
>> VIMSS216103  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.0   0.1   8.8e-39   8.8e-39       2      85 ..      19     102 ..      18     104 .. 0.98

  Alignments for each domain:
  == domain 1  score: 118.0 bits;  conditional E-value: 8.8e-39
       DUF525   2 eqsspeeeryvFaYtirienegeesvqLlsrhwiitdangkveevegegVvgeqPvLkpgesfeYtsgvsletpsGsmeGsytm 85 
                  eqs+pe++r++FaYti+++n+g+ s++Llsrhw it+++g+veev+g gVvg+qP + pg+s++Y+sg++++t++G+m+Gsy+m
  VIMSS216103  19 EQSDPENSRFAFAYTITVQNNGSLSAKLLSRHWLITNGDGEVEEVRGAGVVGQQPNIDPGQSHTYSSGAVISTRVGTMQGSYQM 102
                  89*********************************************************************************9 PP



Or compare VIMSS216103 to CDD or PaperBLAST