PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2167744 to PF19543 (GH123_N)

VIMSS2167744 has 587 amino acids

Query:       GH123_N  [M=969]
Accession:   PF19543.3
Description: Glycoside hydrolase 123, N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    7.2e-11   26.6   0.0    1.3e-10   25.8   0.0    1.3  1  VIMSS2167744  


Domain annotation for each sequence (and alignments):
>> VIMSS2167744  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   1.3e-10   1.3e-10     187     296 ..      28     152 ..      20     165 .. 0.78

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 1.3e-10
       GH123_N 187 kgeaeefegeaqkgeyyafQlgvyaakeelknvkvefsdlkskkgkeiaaseit......clNteGvdydgkpl.........tkevevakgkvqaL 268
                   k + +++++ a  g+    ++ +++ ++ ++nv+++ sd+ +++g+ i++++i+       l + G +  + pl         + +++++k+k+ + 
  VIMSS2167744  28 KLNLNTWNEVAWIGDELNSKIVMWTNSSPVNNVTLSSSDFINENGDLISSNNIKiswlkeTLANIGRSNPSAPLepfpdiihnSGSLNIEKNKIASA 124
                   55667777888888888999**************************9*9999862222224556666666655511122222234789********* PP

       GH123_N 269 wigvdipesaaagtykgtvtvkaegaaa 296
                   wi ++ip++a++g+y+g+++v+a++ ++
  VIMSS2167744 125 WINIKIPRNAKPGIYNGSIEVTADELEK 152
                   **********************998765 PP



Or compare VIMSS2167744 to CDD or PaperBLAST