PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2204314 to PF04430 (DUF498)

VIMSS2204314 has 128 amino acids

Query:       DUF498  [M=109]
Accession:   PF04430.19
Description: Protein of unknown function (DUF498/DUF598)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.6e-35  105.9   0.0    6.5e-35  105.7   0.0    1.0  1  VIMSS2204314  


Domain annotation for each sequence (and alignments):
>> VIMSS2204314  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.7   0.0   6.5e-35   6.5e-35       1     109 []      18     126 ..      18     126 .. 0.95

  Alignments for each domain:
  == domain 1  score: 105.7 bits;  conditional E-value: 6.5e-35
                   EEEEESSEEEETTEEESSEEEE-SSSEEE-HHCS.TTCEECHHHHHHCT..T..SEEEEE-TTS-----HHHHHHHHCCTSEEEEE-HHHHHHHHHH CS
        DUF498   1 idgygeggfrvngvkyegsllvlpgevfawesak.aedlteeslallellepkpellilGtGarlrklppelrealkergigvevmdtraAcrtyNv 96 
                   id+yg+ggfr+++++++gs+l+lp ++  w+  + ++ l++e+++ +     ++e+l++GtG++lr+lp+elr alk+rgi  + m+t+aA+rt+N+
  VIMSS2204314  18 IDAYGNGGFRFADMSHRGSILCLPTGIHGWDM-DmSKPLSPENFRRVLDEAADIEVLLVGTGTELRRLPEELRLALKSRGISSDPMSTGAAVRTFNI 113
                   89****************************95.55999*********445689******************************************** PP

                   HHHHT--EEEEEE CS
        DUF498  97 lasegrrvaaali 109
                   +++e+r vaaali
  VIMSS2204314 114 MLAEQRAVAAALI 126
                   ************8 PP



Or compare VIMSS2204314 to CDD or PaperBLAST